SNP Report
Basic Infomation
| Name | rs66641436 dbSNP |
|---|---|
| Location | chr:20,62480243 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11086128 | 0.84[AMR][1000 genomes] |
| rs11086129 | 0.87[AMR][1000 genomes] |
| rs11086130 | 0.87[AMR][1000 genomes] |
| rs11697094 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11697746 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11700177 | 0.84[AMR][1000 genomes] |
| rs11700373 | 0.87[AMR][1000 genomes] |
| rs12481524 | 0.84[AMR][1000 genomes] |
| rs12624434 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12624502 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12624512 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4809238 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4809239 | 0.81[AMR][1000 genomes] |
| rs4809360 | 0.84[AMR][1000 genomes] |
| rs4809368 | 0.87[AMR][1000 genomes] |
| rs60086020 | 0.87[AMR][1000 genomes] |
| rs6011159 | 0.84[AMR][1000 genomes] |
| rs6011186 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6062547 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs66788614 | 0.87[AMR][1000 genomes] |
| rs66791168 | 0.92[AMR][1000 genomes] |
| rs66887040 | 0.92[AMR][1000 genomes] |
| rs67517207 | 0.87[AMR][1000 genomes] |
| rs73624755 | 0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs755920 | 0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000269223 | Proximal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| ZBTB46 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| ARFRP1 | Distal transcriptional regulation |
| ENSG00000269223 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014