SNP Report
Name | rs6062504   dbSNP |
---|---|
Location | chr:20,62348907 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1056441 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1058319 | 0.91[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap] |
rs1151622 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
rs1151623 | 0.94[ASN][1000 genomes] |
rs1151624 | 0.91[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes] |
rs1291206 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs1291209 | 0.81[ASN][1000 genomes] |
rs1291210 | 0.86[ASN][1000 genomes] |
rs1291213 | 0.96[ASN][1000 genomes] |
rs1741708 | 0.91[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes] |
rs1758205 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes] |
rs2236508 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap] |
rs2236510 | 0.94[ASN][1000 genomes] |
rs2253823 | 0.91[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2253829 | 0.89[ASN][1000 genomes] |
rs2256814 | 0.86[ASN][1000 genomes] |
rs2257437 | 0.96[ASN][1000 genomes] |
rs2257440 | 0.90[JPT][hapmap] |
rs2257885 | 0.86[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap] |
rs2259858 | 0.96[ASN][1000 genomes] |
rs2263805 | 0.97[ASN][1000 genomes] |
rs2263806 | 0.97[ASN][1000 genomes] |
rs2297438 | 0.92[GIH][hapmap] |
rs2297440 | 0.81[GIH][hapmap] |
rs2297441 | 0.82[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap] |
rs2315007 | 0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2315008 | 0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2315009 | 0.96[ASN][1000 genomes] |
rs2427529 | 0.94[ASN][1000 genomes] |
rs2427530 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
rs2427531 | 0.96[ASN][1000 genomes] |
rs2427532 | 0.93[ASN][1000 genomes] |
rs2427533 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
rs2427534 | 0.94[ASN][1000 genomes] |
rs2738758 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
rs2750480 | 0.96[ASN][1000 genomes] |
rs2750481 | 0.96[ASN][1000 genomes] |
rs2750482 | 0.96[ASN][1000 genomes] |
rs2750483 | 0.96[ASN][1000 genomes] |
rs2872881 | 0.96[ASN][1000 genomes] |
rs3208008 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs34251386 | 0.97[ASN][1000 genomes] |
rs35201382 | 0.91[ASN][1000 genomes] |
rs3761123 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4809221 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4809327 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4809328 | 0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4809329 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4809330 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6010620 | 0.92[GIH][hapmap] |
rs6011040 | 0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6011054 | 0.91[YRI][hapmap] |
rs6011057 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs6011058 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6011066 | 0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6062302 | 0.92[GIH][hapmap] |
rs6062304 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6062497 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6062498 | 0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6062506 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6062509 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6062510 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6089961 | 0.97[ASN][1000 genomes] |
rs6089970 | 0.86[CHB][hapmap] |
rs6122154 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
rs6122158 | 0.94[ASN][1000 genomes] |
rs6122159 | 0.91[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.89[ASN][1000 genomes] |
rs67468102 | 0.96[ASN][1000 genomes] |
rs67616625 | 0.94[ASN][1000 genomes] |
rs71325463 | 0.85[ASN][1000 genomes] |
rs8125514 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs8957 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs914559 | 0.94[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ARFRP1 | Distal transcriptional regulation |
ZGPAT | Distal transcriptional regulation |
ENSG00000268858 | Distal transcriptional regulation |
ZGPAT | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014