SNP Report
Basic Infomation
| Name | rs2872979 dbSNP |
|---|---|
| Location | chr:20,62379747 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12053646 | 0.85[ASN][1000 genomes] |
| rs12625387 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12625413 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1887406 | 0.85[ASN][1000 genomes] |
| rs2093118 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2281927 | 0.93[ASN][1000 genomes] |
| rs2281928 | 0.93[ASN][1000 genomes] |
| rs2315646 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2315648 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809222 | 0.95[ASN][1000 genomes] |
| rs4809332 | 0.95[ASN][1000 genomes] |
| rs4809335 | 0.93[ASN][1000 genomes] |
| rs5019252 | 0.82[ASN][1000 genomes] |
| rs6011076 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6089970 | 0.83[ASN][1000 genomes] |
| rs6089973 | 0.92[ASN][1000 genomes] |
| rs6122160 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6122161 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73622887 | 0.84[ASN][1000 genomes] |
| rs932824 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs932825 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARFRP1 | Distal transcriptional regulation |
| TNFRSF6B | Distal transcriptional regulation |
| RTEL1 | Distal transcriptional regulation |
| RTEL1-TNFRSF6B | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014