SNP Report
Basic Infomation
| Name | rs5019252 dbSNP |
|---|---|
| Location | chr:20,62378349 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12625387 | 0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12625413 | 0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs2093118 | 0.84[AMR][1000 genomes] |
| rs2315646 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2315648 | 0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2872979 | 0.82[ASN][1000 genomes] |
| rs4809335 | 0.90[CHB][hapmap] |
| rs6122028 | 0.89[CHB][hapmap] |
| rs6122160 | 0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6122161 | 0.91[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs932824 | 0.83[ASN][1000 genomes] |
| rs932825 | 0.91[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GMEB2 | Distal transcriptional regulation |
| ENSG00000232442 | Distal transcriptional regulation |
| RTEL1 | Distal transcriptional regulation |
| RTEL1-TNFRSF6B | Distal transcriptional regulation |
| TNFRSF6B | Distal transcriptional regulation |
| ARFRP1 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014