SNP Report
Name | rs2315648   dbSNP |
---|---|
Location | chr:20,62380098 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1058319 | 0.83[CHB][hapmap] |
rs1151624 | 0.83[CHB][hapmap] |
rs12053646 | 0.85[ASN][1000 genomes] |
rs12625387 | 0.91[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12625413 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1741708 | 0.83[CHB][hapmap] |
rs1887406 | 0.85[ASN][1000 genomes] |
rs2093118 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2253823 | 0.83[CHB][hapmap] |
rs2281927 | 0.93[ASN][1000 genomes] |
rs2281928 | 0.93[ASN][1000 genomes] |
rs2315646 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2872979 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4809222 | 0.95[ASN][1000 genomes] |
rs4809332 | 0.96[ASN][1000 genomes] |
rs4809335 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes] |
rs5019252 | 0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs6011076 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6089970 | 0.83[ASN][1000 genomes] |
rs6089973 | 0.93[ASN][1000 genomes] |
rs6122028 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
rs6122159 | 0.82[CHB][hapmap] |
rs6122160 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6122161 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs73622887 | 0.83[ASN][1000 genomes] |
rs932824 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs932825 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ARFRP1 | Distal transcriptional regulation |
TNFRSF6B | Distal transcriptional regulation |
RTEL1 | Distal transcriptional regulation |
RTEL1-TNFRSF6B | Distal transcriptional regulation |
ZGPAT | Distal transcriptional regulation |
ENSG00000268858 | Distal transcriptional regulation |
TPD52L2 | Distal transcriptional regulation |
ENSG00000270047 | Distal transcriptional regulation |
ZBTB46 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014