SNP Report
Basic Infomation
| Name | rs6122028 dbSNP |
|---|---|
| Location | chr:20,62391453 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485826 | 0.88[ASN][1000 genomes] |
| rs1151624 | 0.80[CHB][hapmap] |
| rs12625387 | 0.89[CHB][hapmap] |
| rs12625413 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs1741708 | 0.80[CHB][hapmap] |
| rs2253823 | 0.80[CHB][hapmap] |
| rs2315648 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs2315649 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4809335 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5019252 | 0.89[CHB][hapmap] |
| rs6122160 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6122161 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7271043 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs932825 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000232442 | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| ENSG00000229299 | Distal transcriptional regulation |
| LIME1 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014