SNP Report
Basic Infomation
| Name | rs6011076 dbSNP |
|---|---|
| Location | chr:20,62379006 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12625413 | 0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2093118 | 0.84[EUR][1000 genomes] |
| rs2315646 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2315648 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2872979 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6122160 | 0.81[EUR][1000 genomes] |
| rs6122161 | 0.86[GIH][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs932824 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs932825 | 0.86[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RTEL1 | Distal transcriptional regulation |
| RTEL1-TNFRSF6B | Distal transcriptional regulation |
| TNFRSF6B | Distal transcriptional regulation |
| ARFRP1 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014