SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696696	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11698283	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13045795	0.95[EUR][1000 genomes]
rs1321003	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1535043	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1883833	1.00[CEU][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1883838	0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2012180	0.96[CEU][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2868765	0.95[EUR][1000 genomes]
rs4813004	0.96[ASN][1000 genomes]
rs4813005	0.96[ASN][1000 genomes]
rs6017741	0.95[ASN][1000 genomes]
rs6017742	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6032676	0.84[ASN][1000 genomes]
rs6032678	0.82[CEU][hapmap]
rs6074032	0.94[EUR][1000 genomes]
rs6074036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074040	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs747759	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
NCOA5	Distal transcriptional regulation
SLC35C2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)