SNP Report
Basic Infomation
| Name | rs1883838 dbSNP |
|---|---|
| Location | chr:20,44761896 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696696 | 0.90[ASN][1000 genomes] |
| rs12480946 | 0.82[CHB][hapmap] |
| rs1321003 | 0.84[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1535043 | 0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs4813004 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4813005 | 0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6017741 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6017742 | 0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6074036 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6074037 | 0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs747759 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDH22 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014