SNP Report
Basic Infomation
| Name | rs2012180 dbSNP |
|---|---|
| Location | chr:20,44773611 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11569321 | 1.00[ASW][hapmap];0.88[YRI][hapmap] |
| rs11569325 | 1.00[ASW][hapmap] |
| rs11698283 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13045795 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1535043 | 0.83[EUR][1000 genomes] |
| rs1883833 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2868765 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6032678 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs6065931 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6074021 | 0.84[JPT][hapmap] |
| rs6074032 | 0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6074036 | 0.96[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6074037 | 0.96[CEU][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6074040 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7273698 | 1.00[ASW][hapmap] |
| rs747759 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014