SNP Report
Basic Infomation
| Name | rs6074021 dbSNP |
|---|---|
| Location | chr:20,44736796 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1009373 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs11698283 | 0.85[JPT][hapmap] |
| rs13040307 | 0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1358719 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs1535045 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1800686 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1883833 | 0.84[JPT][hapmap] |
| rs2012180 | 0.84[JPT][hapmap] |
| rs4812997 | 0.82[CHB][hapmap];0.84[JPT][hapmap] |
| rs4812998 | 0.84[ASN][1000 genomes] |
| rs6032678 | 0.89[CEU][hapmap];0.82[CHB][hapmap] |
| rs6065924 | 0.83[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes] |
| rs6065925 | 0.87[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs6074020 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs6074024 | 0.87[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs6074032 | 0.83[ASN][1000 genomes] |
| rs6074040 | 0.82[CHB][hapmap];0.84[JPT][hapmap] |
| rs6104466 | 0.91[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6131014 | 0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6131015 | 0.87[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs752118 | 0.83[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD40 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014