Home
Search
List search
Advanced Search
Data content
Tutorial
About Us
Feedback
rVarBase
SNP Report
Basic Infomation
Name
rs6032678  
dbSNP
Location
chr:20,44777295
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11698283
0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs13045795
0.92[ASN][1000 genomes]
rs1883833
0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2012180
0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs2868765
0.98[ASN][1000 genomes]
rs6065931
0.92[ASN][1000 genomes]
rs6074021
0.89[CEU][hapmap];0.82[CHB][hapmap]
rs6074032
0.83[ASN][1000 genomes]
rs6074036
0.82[CEU][hapmap]
rs6074037
0.82[CEU][hapmap]
rs6074040
0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
LZTS2
SCAN
CD40
Pritchard
UBE2F
SCAN