SNP Report
Basic Infomation
| Name | rs4902647 dbSNP |
|---|---|
| Location | chr:14,69254191 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11158762 | 0.80[JPT][hapmap] |
| rs11158763 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12434551 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12435329 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12889006 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1465788 | 0.80[JPT][hapmap] |
| rs1595260 | 0.80[JPT][hapmap] |
| rs2236262 | 1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3825568 | 0.92[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4899257 | 0.91[AMR][1000 genomes] |
| rs7146217 | 0.94[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs7146491 | 0.90[ASN][1000 genomes] |
| rs747854 | 0.83[GIH][hapmap] |
| rs8022092 | 0.80[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC16A3 | Distal transcriptional regulation |
| ENSG00000267598 | Distal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| ENSG00000259038 | Distal transcriptional regulation |
| RNU1-5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| MAX | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014