SNP Report
Basic Infomation
| Name | rs12889006 dbSNP |
|---|---|
| Location | chr:14,69260563 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11158763 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11626883 | 0.91[ASN][1000 genomes] |
| rs12434551 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12435329 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1465788 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs1595260 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs17106304 | 0.87[ASN][1000 genomes] |
| rs194778 | 0.86[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2236262 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2236263 | 0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs3742887 | 0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs3825568 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4899259 | 0.84[ASN][1000 genomes] |
| rs4902647 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6573857 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs8011558 | 0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs8022092 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs927292 | 0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Proximal transcriptional regulation |
| UNC119 | Distal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| PNISR | Distal transcriptional regulation |
| CDC42SE1 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| ENSG00000203499 | Distal transcriptional regulation |
| ENSG00000259038 | Distal transcriptional regulation |
| FAM222A | Distal transcriptional regulation |
| EXOSC7 | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| RPS12 | Distal transcriptional regulation |
| SNORD101 | Distal transcriptional regulation |
| ZFYVE26 | Distal transcriptional regulation |
| ACTN1 | Distal transcriptional regulation |
| ACTN1-AS1 | Distal transcriptional regulation |
| ZFP36L1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014