SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11158762	0.84[JPT][hapmap]
rs11158763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435329	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889006	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2236262	0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3825568	0.91[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4899257	0.91[AMR][1000 genomes]
rs4902647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146217	0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs7146491	0.90[ASN][1000 genomes]
rs8022092	0.80[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAD51B	Distal transcriptional regulation
ENSG00000259038	Distal transcriptional regulation
RNU1-5	Distal transcriptional regulation
MLST8	Distal transcriptional regulation
ENSG00000252958	Distal transcriptional regulation
ENSG00000258623	Distal transcriptional regulation
ENSG00000242941	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)