SNP Report

Basic Infomation

Name	rs3742887 dbSNP
Location	chr:14,69262441
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11158762	0.81[JPT][hapmap]
rs11626883	0.90[ASN][1000 genomes]
rs12889006	0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1465788	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1595260	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106304	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs194778	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2236262	0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs2236263	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825568	0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs4899259	0.97[ASN][1000 genomes]
rs6573857	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7146217	0.88[JPT][hapmap];0.84[YRI][hapmap]
rs8011558	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8022092	0.93[ASN][1000 genomes]
rs927292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Proximal transcriptional regulation
LTV1	Distal transcriptional regulation
ZNF623	Distal transcriptional regulation
CNOT2	Distal transcriptional regulation
ENSG00000257815	Distal transcriptional regulation
RAD51B	Distal transcriptional regulation
ENSG00000207089	Distal transcriptional regulation
ENSG00000202077	Distal transcriptional regulation
CDC42SE1	Distal transcriptional regulation
PPP1R12A	Distal transcriptional regulation
MIR21	Distal transcriptional regulation
ENSG00000259038	Distal transcriptional regulation
VMP1	Distal transcriptional regulation
ENSG00000261777	Distal transcriptional regulation
DDX19A	Distal transcriptional regulation
KREMEN2	Distal transcriptional regulation
PCBP1-AS1	Distal transcriptional regulation
PCBP1	Distal transcriptional regulation
ENSG00000242941	Distal transcriptional regulation
ACTN1	Distal transcriptional regulation
ACTN1-AS1	Distal transcriptional regulation
ZFP36L1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)