SNP Report
Basic Infomation
| Name | rs7146217 dbSNP |
|---|---|
| Location | chr:14,69250915 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11158762 | 0.80[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11158763 | 0.92[ASN][1000 genomes] |
| rs12434551 | 0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12435329 | 0.92[ASN][1000 genomes] |
| rs1465788 | 0.84[JPT][hapmap];0.82[LWK][hapmap];0.81[YRI][hapmap] |
| rs1595260 | 0.84[JPT][hapmap];0.81[YRI][hapmap] |
| rs194778 | 0.89[JPT][hapmap] |
| rs2236262 | 0.83[GIH][hapmap] |
| rs2236263 | 0.89[JPT][hapmap];0.88[YRI][hapmap] |
| rs3742887 | 0.88[JPT][hapmap];0.84[YRI][hapmap] |
| rs3825568 | 0.83[GIH][hapmap] |
| rs4902647 | 0.94[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs6573857 | 0.88[JPT][hapmap] |
| rs7146491 | 0.98[ASN][1000 genomes] |
| rs8005236 | 0.89[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs8011558 | 0.89[JPT][hapmap] |
| rs927292 | 0.88[JPT][hapmap];0.88[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259038 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014