SNP Report

Basic Infomation

Name	rs3926687 dbSNP
Location	chr:17,5492436
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10852870	0.82[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11078575	0.82[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1121814	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156989	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11651270	0.81[CEU][hapmap]
rs11657333	0.90[YRI][hapmap]
rs12150220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185249	0.82[CEU][hapmap]
rs12937224	0.81[CEU][hapmap]
rs12953185	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1877658	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2255534	0.81[CEU][hapmap]
rs2670636	0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2670641	0.82[CEU][hapmap]
rs2670643	0.91[EUR][1000 genomes]
rs2716912	0.82[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2716913	0.82[EUR][1000 genomes]
rs2716914	0.82[EUR][1000 genomes]
rs2716937	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733349	0.82[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2733355	0.82[EUR][1000 genomes]
rs2733356	0.82[EUR][1000 genomes]
rs2733357	0.82[EUR][1000 genomes]
rs2733379	0.82[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs2733380	0.82[CEU][hapmap]
rs2953436	0.82[CEU][hapmap]
rs4790279	0.82[MEX][hapmap]
rs4790280	0.82[MEX][hapmap]
rs4790777	0.83[MEX][hapmap]
rs4790791	0.82[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4790792	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8073142	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8073839	0.90[EUR][1000 genomes]
rs8182354	0.82[MEX][hapmap]
rs925595	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs925597	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs925598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs961826	0.82[CEU][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs961827	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9905447	0.81[ASN][1000 genomes]
rs9908489	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913271	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
NLRP1	Proximal transcriptional regulation
NLRP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
RPAIN	SCAN
PFN1	SCAN
NUP88	SCAN