SNP Report

Basic Infomation

Name	rs12953185 dbSNP
Location	chr:17,5527090
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10852870	0.81[ASN][1000 genomes]
rs11078575	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1121814	0.84[EUR][1000 genomes]
rs1156989	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12150220	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12185249	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1877658	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2255534	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2670636	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2670641	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2716912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2716913	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2716914	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2716937	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2733349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2733355	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2733356	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2733357	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2733379	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2733380	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2953436	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3926687	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4790791	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4790792	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55910334	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8073142	0.81[EUR][1000 genomes]
rs925595	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs925597	0.81[EUR][1000 genomes]
rs925598	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs961826	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs961827	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9908489	0.83[EUR][1000 genomes]
rs9913271	0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
NLRP1	Proximal transcriptional regulation
NLRP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)