SNP Report

Basic Infomation

Name	rs4790791 dbSNP
Location	chr:17,5528097
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10163480	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10163489	0.81[EUR][1000 genomes]
rs10163490	0.81[EUR][1000 genomes]
rs10852870	0.87[MEX][hapmap]
rs11078568	1.00[YRI][hapmap]
rs11078575	0.87[MEX][hapmap]
rs11078579	0.81[EUR][1000 genomes]
rs1121814	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11653496	1.00[YRI][hapmap]
rs12150220	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12185249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12944976	1.00[CHB][hapmap]
rs12953185	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1513839	0.81[EUR][1000 genomes]
rs1513840	0.81[EUR][1000 genomes]
rs1513841	0.81[EUR][1000 genomes]
rs2137726	0.81[EUR][1000 genomes]
rs2137727	0.80[EUR][1000 genomes]
rs2175828	0.81[EUR][1000 genomes]
rs2255534	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2670636	0.82[CEU][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2670641	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2716912	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2716913	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2716914	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733349	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2733355	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733356	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733357	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2733379	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2733380	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2953436	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3926687	0.82[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4790275	0.85[CEU][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes]
rs4790276	0.81[EUR][1000 genomes]
rs4790277	0.81[EUR][1000 genomes]
rs4790278	0.81[EUR][1000 genomes]
rs4790279	0.85[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs4790280	0.85[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs4790777	0.82[MEX][hapmap]
rs4790792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55910334	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8182354	0.85[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs925598	0.82[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9908489	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9913271	0.82[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9916286	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
NLRP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
ALOX12P2	SCAN
PELP1	SCAN