SNP Report

Basic Infomation

Name	rs2953436 dbSNP
Location	chr:17,5540034
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10163480	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10163489	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10163490	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11078579	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1156989	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12150220	0.82[CEU][hapmap]
rs12185249	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12953185	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1513839	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1513840	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1513841	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2137726	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2137727	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2175828	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2255534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2670636	0.82[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2670641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2716912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2716913	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2716914	0.83[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2733349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2733355	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2733356	0.82[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2733357	0.83[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2733379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2733380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3926687	0.82[CEU][hapmap]
rs4790275	0.86[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4790276	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4790277	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4790278	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4790279	0.85[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4790280	0.85[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4790791	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4790792	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55910334	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8182354	0.85[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs925598	0.83[CEU][hapmap]
rs9913271	0.82[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
NLRP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)