SNP Report
Basic Infomation
| Name | rs2733379 dbSNP |
|---|---|
| Location | chr:17,5533510 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10163480 | 0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10163489 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10163490 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10852870 | 0.81[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap] |
| rs11078575 | 0.93[ASW][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.82[LWK][hapmap];0.87[MEX][hapmap] |
| rs11078579 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1156989 | 0.85[CHB][hapmap] |
| rs12150220 | 0.82[CEU][hapmap] |
| rs12185249 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12953185 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1513839 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1513840 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1513841 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1877658 | 0.80[ASN][1000 genomes] |
| rs2137726 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2137727 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2175828 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2255534 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2670636 | 1.00[ASW][hapmap];0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2670641 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2716912 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2716913 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2716914 | 0.82[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2716937 | 0.80[ASN][1000 genomes] |
| rs2733349 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2733355 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2733356 | 0.81[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2733357 | 0.82[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2733380 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2953436 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3926687 | 0.82[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap] |
| rs4790275 | 0.85[CEU][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4790276 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4790277 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4790278 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4790279 | 0.85[CEU][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4790280 | 0.85[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4790777 | 0.82[MEX][hapmap] |
| rs4790791 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4790792 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs55910334 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8182354 | 0.85[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs925595 | 0.80[ASN][1000 genomes] |
| rs925598 | 0.82[CEU][hapmap] |
| rs9913271 | 0.82[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014