SNP Report
Basic Infomation
| Name | rs11651270 dbSNP |
|---|---|
| Location | chr:17,5425077 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11870188 | 0.80[ASN][1000 genomes] |
| rs12150220 | 0.81[CEU][hapmap] |
| rs12937224 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3786056 | 0.86[CHD][hapmap];0.80[ASN][1000 genomes] |
| rs3926687 | 0.81[CEU][hapmap] |
| rs56750129 | 0.82[ASN][1000 genomes] |
| rs57636751 | 0.80[ASN][1000 genomes] |
| rs58604457 | 0.80[ASN][1000 genomes] |
| rs59564976 | 0.82[ASN][1000 genomes] |
| rs8074853 | 0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs925598 | 0.81[CEU][hapmap] |
| rs9896759 | 0.81[ASN][1000 genomes] |
| rs9913271 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | Proximal transcriptional regulation |
| NLRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014