SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11651270	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12150220	0.81[CEU][hapmap]
rs28704982	0.83[AMR][1000 genomes]
rs34042511	0.84[AMR][1000 genomes]
rs3786056	0.84[CHD][hapmap]
rs3926687	0.81[CEU][hapmap]
rs8074853	0.85[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs925598	0.81[CEU][hapmap]
rs9913271	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
NLRP1	Proximal transcriptional regulation
NLRP1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 4)