SNP Report
Basic Infomation
| Name | rs34357042 dbSNP |
|---|---|
| Location | chr:10,35515198 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 59)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11592037 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11592356 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11592886 | 0.82[AMR][1000 genomes] |
| rs11592925 | 0.82[AMR][1000 genomes] |
| rs11592989 | 0.85[AMR][1000 genomes] |
| rs11594771 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11595640 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs11595890 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs11597746 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs11597913 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs11598685 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11598690 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11599196 | 0.81[AFR][1000 genomes] |
| rs11599288 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11599920 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12098294 | 0.96[EUR][1000 genomes] |
| rs1213385 | 0.93[EUR][1000 genomes] |
| rs12761577 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12762124 | 0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12762891 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12765063 | 0.82[AMR][1000 genomes] |
| rs12767102 | 0.81[AFR][1000 genomes] |
| rs12767868 | 0.81[AFR][1000 genomes] |
| rs12768323 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12769539 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12770381 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12774368 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12775829 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12777222 | 0.81[AFR][1000 genomes] |
| rs12778629 | 0.81[AFR][1000 genomes] |
| rs12780255 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12782377 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs16935922 | 0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17499780 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17500653 | 0.90[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17583945 | 0.82[AMR][1000 genomes] |
| rs17583959 | 0.82[AMR][1000 genomes] |
| rs2384353 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34001864 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34006545 | 0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34091150 | 0.90[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34233967 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs34306263 | 0.80[AMR][1000 genomes] |
| rs34595862 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs34694028 | 0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs35013161 | 0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs35133865 | 0.85[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35168556 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35444718 | 0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35550382 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs35557860 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35714830 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35965004 | 0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs58468612 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs67948565 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7090722 | 0.82[AMR][1000 genomes] |
| rs72793871 | 0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7923532 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs877779 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000230534 | Distal transcriptional regulation |
| CREM | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014