SNP Report

Basic Infomation

Name	rs17500653 dbSNP
Location	chr:10,35535597
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11592037	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11592356	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11592886	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11592925	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11594771	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11595640	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11597746	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11598685	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11598690	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11599288	0.90[ASN][1000 genomes]
rs11599920	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12762124	0.82[ASN][1000 genomes]
rs12765063	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12767102	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12767868	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12774368	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12775079	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12777222	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12778629	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12780255	0.82[ASN][1000 genomes]
rs12782377	1.00[CHB][hapmap]
rs16935922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17499780	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17583945	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17583959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384285	0.82[ASW][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs2384353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs34001864	0.82[ASN][1000 genomes]
rs34091150	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34233967	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34357042	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34595862	0.82[ASN][1000 genomes]
rs35444718	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35557860	0.87[ASN][1000 genomes]
rs35965004	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58468612	0.82[ASN][1000 genomes]
rs67948565	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7923532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs877779	1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
CCNY	Proximal transcriptional regulation
ENSG00000200097	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)