SNP Report
Name | rs17500653   dbSNP |
---|---|
Location | chr:10,35535597 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11592037 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs11592356 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs11592886 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs11592925 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs11594771 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11595640 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs11597746 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11598685 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs11598690 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs11599288 | 0.90[ASN][1000 genomes] |
rs11599920 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs12762124 | 0.82[ASN][1000 genomes] |
rs12765063 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs12767102 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12767868 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12774368 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12775079 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs12777222 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs12778629 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12780255 | 0.82[ASN][1000 genomes] |
rs12782377 | 1.00[CHB][hapmap] |
rs16935922 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs17499780 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs17583945 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs17583959 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2384285 | 0.82[ASW][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap] |
rs2384353 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs34001864 | 0.82[ASN][1000 genomes] |
rs34091150 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34233967 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34357042 | 0.90[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs34595862 | 0.82[ASN][1000 genomes] |
rs35444718 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs35557860 | 0.87[ASN][1000 genomes] |
rs35965004 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58468612 | 0.82[ASN][1000 genomes] |
rs67948565 | 0.90[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs7923532 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs877779 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Symbol | Regulation type |
---|---|
CCNY | Proximal transcriptional regulation |
ENSG00000200097 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014