SNP Report

Basic Infomation

Name	rs16935922 dbSNP
Location	chr:10,35521598
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11010131	0.88[CEU][hapmap]
rs11592037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11592356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11592886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11592925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11594771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11595640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11597746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11598685	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11598690	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11599288	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11599920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12098294	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1213385	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12761577	0.90[EUR][1000 genomes]
rs12762124	0.89[EUR][1000 genomes]
rs12762891	0.88[EUR][1000 genomes]
rs12765063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12767102	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12767868	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12769539	0.99[EUR][1000 genomes]
rs12774368	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12775079	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12777222	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12778629	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12780255	0.89[EUR][1000 genomes]
rs12782377	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17499780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17500653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17583945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17583959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384285	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs2384353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs34001864	0.90[EUR][1000 genomes]
rs34006545	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34233967	0.92[EUR][1000 genomes]
rs34357042	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34694028	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013161	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35444718	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35557860	0.92[EUR][1000 genomes]
rs58468612	0.92[EUR][1000 genomes]
rs67948565	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72793871	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs877779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000233200	Proximal transcriptional regulation
ENSG00000253070	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)