SNP Report
Basic Infomation
| Name | rs35965004 dbSNP |
|---|---|
| Location | chr:10,35542267 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11592037 | 0.81[ASN][1000 genomes] |
| rs11598685 | 0.90[ASN][1000 genomes] |
| rs11598690 | 0.90[ASN][1000 genomes] |
| rs11599288 | 0.90[ASN][1000 genomes] |
| rs11599920 | 0.92[ASN][1000 genomes] |
| rs12762124 | 0.82[ASN][1000 genomes] |
| rs12774368 | 0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12780255 | 0.82[ASN][1000 genomes] |
| rs17500653 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2384353 | 0.82[ASN][1000 genomes] |
| rs34001864 | 0.82[ASN][1000 genomes] |
| rs34091150 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34233967 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34357042 | 0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs34595862 | 0.82[ASN][1000 genomes] |
| rs35444718 | 0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35557860 | 0.87[ASN][1000 genomes] |
| rs58468612 | 0.82[ASN][1000 genomes] |
| rs67948565 | 0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7923532 | 0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000200097 | Proximal transcriptional regulation |
| CCNY | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014