SNP Report
Basic Infomation
| Name | rs2513749 dbSNP |
|---|---|
| Location | chr:11,62105391 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 64)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231050 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs11231061 | 0.87[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11820997 | 1.00[ASN][1000 genomes] |
| rs11821255 | 1.00[ASN][1000 genomes] |
| rs11821315 | 1.00[ASN][1000 genomes] |
| rs11822408 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11823982 | 1.00[CHB][hapmap] |
| rs12274607 | 1.00[ASN][1000 genomes] |
| rs12279819 | 0.89[EUR][1000 genomes] |
| rs12287823 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs12292586 | 0.85[EUR][1000 genomes] |
| rs12788265 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs17157227 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap] |
| rs1881535 | 1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2246920 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2463820 | 0.99[EUR][1000 genomes] |
| rs2463821 | 0.99[EUR][1000 genomes] |
| rs2463822 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2463825 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2513052 | 1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2513053 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2513074 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2513075 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2513076 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2513077 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2513737 | 0.90[CEU][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2513744 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2513747 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs28641974 | 1.00[ASN][1000 genomes] |
| rs28678254 | 0.85[EUR][1000 genomes] |
| rs34037877 | 1.00[ASN][1000 genomes] |
| rs34168094 | 1.00[ASN][1000 genomes] |
| rs34533893 | 1.00[ASN][1000 genomes] |
| rs34775496 | 1.00[ASN][1000 genomes] |
| rs34881912 | 1.00[ASN][1000 genomes] |
| rs35961711 | 1.00[ASN][1000 genomes] |
| rs3889277 | 1.00[CHB][hapmap] |
| rs4340061 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs57156020 | 1.00[ASN][1000 genomes] |
| rs61893610 | 1.00[ASN][1000 genomes] |
| rs61893614 | 1.00[ASN][1000 genomes] |
| rs61893616 | 1.00[ASN][1000 genomes] |
| rs61893634 | 1.00[ASN][1000 genomes] |
| rs61893635 | 1.00[ASN][1000 genomes] |
| rs61893637 | 1.00[ASN][1000 genomes] |
| rs61893638 | 1.00[ASN][1000 genomes] |
| rs61893639 | 1.00[ASN][1000 genomes] |
| rs6863 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs7104149 | 1.00[CEU][hapmap] |
| rs7110781 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7112238 | 0.87[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7113294 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs7123323 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7125402 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7127368 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs71490371 | 1.00[ASN][1000 genomes] |
| rs71490372 | 1.00[ASN][1000 genomes] |
| rs72921498 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72921501 | 0.99[EUR][1000 genomes] |
| rs72923207 | 0.99[EUR][1000 genomes] |
| rs72923263 | 0.83[EUR][1000 genomes] |
| rs7481995 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7941556 | 0.87[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs951677 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASRGL1 | Proximal transcriptional regulation |
| ENSG00000252140 | Distal transcriptional regulation |
| SNHG1 | Distal transcriptional regulation |
| SNORD28 | Distal transcriptional regulation |
| SNORD27 | Distal transcriptional regulation |
| SNORD26 | Distal transcriptional regulation |
| SNORD25 | Distal transcriptional regulation |
| ENSG00000255118 | RNA binding protein mediated regulation |
| ASRGL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014