SNP Report

Basic Infomation

Name	rs71490372 dbSNP
Location	chr:11,62166093
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11820997	1.00[ASN][1000 genomes]
rs11821255	1.00[ASN][1000 genomes]
rs11821315	1.00[ASN][1000 genomes]
rs11822408	1.00[ASN][1000 genomes]
rs12274607	1.00[ASN][1000 genomes]
rs12287823	1.00[ASN][1000 genomes]
rs12788265	1.00[AMR][1000 genomes]
rs12796413	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12798826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12802396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2246920	1.00[ASN][1000 genomes]
rs2302362	0.85[EUR][1000 genomes]
rs2302363	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2513749	1.00[ASN][1000 genomes]
rs28641974	1.00[ASN][1000 genomes]
rs34037877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34143441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34168094	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34533893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34685253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34707686	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34775496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34881912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35214315	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35271183	0.94[EUR][1000 genomes]
rs35739405	1.00[EUR][1000 genomes]
rs35961711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41428648	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4340061	1.00[ASN][1000 genomes]
rs57156020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893607	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61893610	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61893649	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893651	1.00[AMR][1000 genomes]
rs61893655	1.00[AMR][1000 genomes]
rs7113294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71490371	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71490374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71490375	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71490377	1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SCGB1A1	Distal transcriptional regulation
TUT1	Distal transcriptional regulation
MIR3654	Distal transcriptional regulation
WDR74	Distal transcriptional regulation
INTS5	Distal transcriptional regulation
C11orf48	Distal transcriptional regulation
ENSG00000255432	Distal transcriptional regulation
METTL12	Distal transcriptional regulation
SNORA57	Distal transcriptional regulation
AHNAK	Distal transcriptional regulation
ENSG00000257058	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)