SNP Report
Basic Infomation
| Name | rs34533893 dbSNP |
|---|---|
| Location | chr:11,62169742 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11820997 | 1.00[ASN][1000 genomes] |
| rs11821255 | 1.00[ASN][1000 genomes] |
| rs11821315 | 1.00[ASN][1000 genomes] |
| rs11822408 | 1.00[ASN][1000 genomes] |
| rs12274607 | 1.00[ASN][1000 genomes] |
| rs12282799 | 0.97[AFR][1000 genomes] |
| rs12287823 | 1.00[ASN][1000 genomes] |
| rs12796413 | 0.94[EUR][1000 genomes] |
| rs12798826 | 1.00[EUR][1000 genomes] |
| rs12802396 | 1.00[EUR][1000 genomes] |
| rs13377501 | 0.90[AFR][1000 genomes] |
| rs2246920 | 1.00[ASN][1000 genomes] |
| rs2302362 | 0.85[EUR][1000 genomes] |
| rs2302363 | 0.85[EUR][1000 genomes] |
| rs2513749 | 1.00[ASN][1000 genomes] |
| rs28641974 | 1.00[ASN][1000 genomes] |
| rs34037877 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34143441 | 1.00[EUR][1000 genomes] |
| rs34168094 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34685253 | 1.00[EUR][1000 genomes] |
| rs34707686 | 0.85[EUR][1000 genomes] |
| rs34775496 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34881912 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35214315 | 0.89[EUR][1000 genomes] |
| rs35271183 | 0.94[EUR][1000 genomes] |
| rs35739405 | 1.00[EUR][1000 genomes] |
| rs35961711 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3889277 | 1.00[EUR][1000 genomes] |
| rs41428648 | 0.85[EUR][1000 genomes] |
| rs4340061 | 1.00[ASN][1000 genomes] |
| rs4433577 | 0.98[AFR][1000 genomes] |
| rs4641484 | 0.98[AFR][1000 genomes] |
| rs57156020 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893607 | 0.88[EUR][1000 genomes] |
| rs61893610 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893614 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893616 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893634 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893635 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893637 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893638 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893639 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893643 | 1.00[EUR][1000 genomes] |
| rs61893649 | 0.85[EUR][1000 genomes] |
| rs7113294 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7114585 | 0.98[AFR][1000 genomes] |
| rs7127368 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7130253 | 0.98[AFR][1000 genomes] |
| rs71490371 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71490372 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71490374 | 1.00[EUR][1000 genomes] |
| rs71490375 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB1A1 | Proximal transcriptional regulation |
| SCGB1A1 | Distal transcriptional regulation |
| EEF1G | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014