SNP Report
Basic Infomation
| Name | rs12287823 dbSNP |
|---|---|
| Location | chr:11,62113867 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897261 | 0.81[YRI][hapmap] |
| rs11231043 | 1.00[AMR][1000 genomes] |
| rs11231063 | 1.00[AMR][1000 genomes] |
| rs11231067 | 0.81[YRI][hapmap] |
| rs11820258 | 0.82[YRI][hapmap] |
| rs11820997 | 1.00[ASN][1000 genomes] |
| rs11821255 | 1.00[ASN][1000 genomes] |
| rs11821315 | 1.00[ASN][1000 genomes] |
| rs11822408 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11823982 | 1.00[CHB][hapmap] |
| rs11824690 | 0.81[YRI][hapmap] |
| rs12274607 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12274789 | 1.00[AMR][1000 genomes] |
| rs12294413 | 1.00[AMR][1000 genomes] |
| rs12788265 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs2246920 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs2302359 | 0.83[YRI][hapmap] |
| rs2513749 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs28641974 | 1.00[ASN][1000 genomes] |
| rs34037877 | 1.00[ASN][1000 genomes] |
| rs34168094 | 1.00[ASN][1000 genomes] |
| rs34533893 | 1.00[ASN][1000 genomes] |
| rs34775496 | 1.00[ASN][1000 genomes] |
| rs34881912 | 1.00[ASN][1000 genomes] |
| rs35961711 | 1.00[ASN][1000 genomes] |
| rs3889277 | 1.00[CHB][hapmap] |
| rs4340061 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs56657574 | 1.00[AMR][1000 genomes] |
| rs57156020 | 1.00[ASN][1000 genomes] |
| rs58628105 | 1.00[AMR][1000 genomes] |
| rs61893610 | 1.00[ASN][1000 genomes] |
| rs61893614 | 1.00[ASN][1000 genomes] |
| rs61893616 | 1.00[ASN][1000 genomes] |
| rs61893634 | 1.00[ASN][1000 genomes] |
| rs61893635 | 1.00[ASN][1000 genomes] |
| rs61893637 | 1.00[ASN][1000 genomes] |
| rs61893638 | 1.00[ASN][1000 genomes] |
| rs61893639 | 1.00[ASN][1000 genomes] |
| rs7113294 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs7127368 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs71490371 | 1.00[ASN][1000 genomes] |
| rs71490372 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASRGL1 | Distal transcriptional regulation |
| ENSG00000255118 | Distal transcriptional regulation |
| ASRGL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014