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rVarBase
SNP Report
Basic Infomation
Name
rs12282799  
dbSNP
Location
chr:11,62171497
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs13377501
0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34533893
0.97[AFR][1000 genomes]
rs4433577
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4641484
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57156020
0.98[AFR][1000 genomes]
rs61893638
0.96[AFR][1000 genomes]
rs7113294
0.98[AFR][1000 genomes]
rs7114585
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130253
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SCGB1A1
Proximal transcriptional regulation
EEF1G
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)