SNP Report
Basic Infomation
| Name | rs12796413 dbSNP |
|---|---|
| Location | chr:11,62179845 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12788265 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12798826 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12802396 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2302363 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34037877 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34143441 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34168094 | 0.83[EUR][1000 genomes] |
| rs34533893 | 0.94[EUR][1000 genomes] |
| rs34685253 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34707686 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34775496 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34881912 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35214315 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35271183 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35739405 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35961711 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3889277 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41428648 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57156020 | 0.94[EUR][1000 genomes] |
| rs61893607 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs61893610 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs61893614 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61893616 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61893634 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61893635 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61893637 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61893638 | 0.94[EUR][1000 genomes] |
| rs61893639 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61893643 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893649 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61893651 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61893655 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7113294 | 0.94[EUR][1000 genomes] |
| rs7127368 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs71490371 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs71490372 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs71490374 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71490375 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs71490377 | 1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB1A1 | Distal transcriptional regulation |
| EEF1G | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014