SNP Report
Basic Infomation
| Name | rs17157227 dbSNP |
|---|---|
| Location | chr:11,62169772 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231050 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs11231061 | 0.88[EUR][1000 genomes] |
| rs12279819 | 0.88[EUR][1000 genomes] |
| rs12292586 | 0.91[EUR][1000 genomes] |
| rs1881535 | 1.00[CEU][hapmap] |
| rs2246920 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap] |
| rs2463822 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap] |
| rs2513052 | 1.00[CEU][hapmap] |
| rs2513077 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap] |
| rs2513737 | 0.89[CEU][hapmap] |
| rs2513747 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap] |
| rs2513749 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap] |
| rs28678254 | 0.91[EUR][1000 genomes] |
| rs6863 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs7104149 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7112238 | 0.88[EUR][1000 genomes] |
| rs7121684 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72923207 | 0.89[AFR][1000 genomes] |
| rs72923263 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72923272 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7941556 | 0.88[EUR][1000 genomes] |
| rs951677 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB1A1 | Proximal transcriptional regulation |
| SCGB1A1 | Distal transcriptional regulation |
| EEF1G | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014