SNP Report
Basic Infomation
| Name | rs72923272 dbSNP |
|---|---|
| Location | chr:11,62166832 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231050 | 0.84[EUR][1000 genomes] |
| rs11231061 | 0.89[EUR][1000 genomes] |
| rs12279819 | 0.89[EUR][1000 genomes] |
| rs12292586 | 0.92[EUR][1000 genomes] |
| rs17157227 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs28678254 | 0.92[EUR][1000 genomes] |
| rs6863 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7104149 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7112238 | 0.89[EUR][1000 genomes] |
| rs7121684 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72923207 | 0.89[AFR][1000 genomes] |
| rs72923263 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7941556 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB1A1 | Distal transcriptional regulation |
| TUT1 | Distal transcriptional regulation |
| MIR3654 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| INTS5 | Distal transcriptional regulation |
| C11orf48 | Distal transcriptional regulation |
| ENSG00000255432 | Distal transcriptional regulation |
| METTL12 | Distal transcriptional regulation |
| SNORA57 | Distal transcriptional regulation |
| AHNAK | Distal transcriptional regulation |
| ENSG00000257058 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014