SNP Report
Basic Infomation
| Name | rs6863 dbSNP |
|---|---|
| Location | chr:11,62160725 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231050 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11231061 | 0.93[EUR][1000 genomes] |
| rs12279819 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12292586 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17157227 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs1881535 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2246920 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs2463820 | 0.83[EUR][1000 genomes] |
| rs2463821 | 0.83[EUR][1000 genomes] |
| rs2463822 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs2513052 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2513053 | 0.82[EUR][1000 genomes] |
| rs2513074 | 0.82[EUR][1000 genomes] |
| rs2513075 | 0.82[EUR][1000 genomes] |
| rs2513076 | 0.82[EUR][1000 genomes] |
| rs2513077 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs2513737 | 0.90[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2513747 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs2513749 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs28678254 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7104149 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs7112238 | 0.93[EUR][1000 genomes] |
| rs7121684 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7125402 | 0.82[EUR][1000 genomes] |
| rs72921498 | 0.83[EUR][1000 genomes] |
| rs72921501 | 0.83[EUR][1000 genomes] |
| rs72923207 | 0.83[EUR][1000 genomes] |
| rs72923263 | 0.99[EUR][1000 genomes] |
| rs72923272 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7481995 | 0.81[EUR][1000 genomes] |
| rs7941556 | 0.93[EUR][1000 genomes] |
| rs951677 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASRGL1 | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| C11orf48 | Distal transcriptional regulation |
| C11orf83 | Distal transcriptional regulation |
| B3GAT3 | Distal transcriptional regulation |
| AHNAK | Distal transcriptional regulation |
| ENSG00000257058 | Distal transcriptional regulation |
| ENSG00000255432 | Distal transcriptional regulation |
| METTL12 | Distal transcriptional regulation |
| SNORA57 | Distal transcriptional regulation |
| ENSG00000255126 | RNA binding protein mediated regulation |
| ASRGL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014