SNP Report

Basic Infomation

Name	rs2297906 dbSNP
Location	chr:1,201013336
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10494827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10753887	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10800751	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10800752	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10920094	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10920099	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11583140	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11807626	0.81[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs1546416	0.81[CEU][hapmap]
rs3767499	0.81[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3767500	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3767503	0.81[CEU][hapmap]
rs4915474	0.82[CEU][hapmap]
rs6427870	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6427871	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6675915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687260	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6700264	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6701469	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7526353	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs957957	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CACNA1S	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)