SNP Report
Basic Infomation
| Name | rs6675915 dbSNP |
|---|---|
| Location | chr:1,201010862 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10494827 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10753887 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10800751 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10800752 | 0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10920094 | 0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10920099 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11583140 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11807626 | 0.84[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs1546416 | 0.80[CEU][hapmap] |
| rs2297906 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3767499 | 0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3767500 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6427870 | 0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6427871 | 0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6687260 | 0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6700264 | 0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6701469 | 0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7526353 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs957957 | 0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C1orf106 | Distal transcriptional regulation |
| ENSG00000234132 | RNA binding protein mediated regulation |
| CACNA1S | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014