SNP Report
Name | rs10920099   dbSNP |
---|---|
Location | chr:1,201003606 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10494827 | 0.92[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10753887 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10800751 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10800752 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10920090 | 0.85[ASW][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes] |
rs10920094 | 0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs11583140 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs11807626 | 0.92[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs1546416 | 0.82[CEU][hapmap] |
rs2297906 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3767499 | 0.83[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.83[ASN][1000 genomes] |
rs3767500 | 0.83[ASN][1000 genomes] |
rs6427870 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6427871 | 0.85[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6675915 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6687260 | 0.92[ASW][hapmap];0.89[CEU][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6700264 | 1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6701469 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7526353 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs957957 | 1.00[ASW][hapmap];0.89[CEU][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000234132 | Proximal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
EPN2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014