SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10494827	0.82[CEU][hapmap];0.83[MEX][hapmap]
rs10920091	0.84[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs10920099	0.82[CEU][hapmap]
rs12065493	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1507147	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2221581	0.85[EUR][1000 genomes]
rs2279943	0.85[CEU][hapmap]
rs2297906	0.81[CEU][hapmap]
rs6427870	0.81[CEU][hapmap]
rs6427871	0.81[CEU][hapmap]
rs6675915	0.80[CEU][hapmap]
rs6701469	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
C1orf106	Distal transcriptional regulation
ENSG00000234132	RNA binding protein mediated regulation
CACNA1S	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
LTBP2	SCAN
LAYN	SCAN