SNP Report
Basic Infomation
| Name | rs17234378 dbSNP |
|---|---|
| Location | chr:6,20844741 |
| Allele | A/G/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17826361 | 0.80[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs4370355 | 1.00[ASW][hapmap] |
| rs4710942 | 1.00[ASW][hapmap] |
| rs4712542 | 1.00[ASW][hapmap] |
| rs9295482 | 1.00[ASW][hapmap] |
| rs9350298 | 1.00[ASW][hapmap] |
| rs9368243 | 1.00[ASW][hapmap] |
| rs9368248 | 1.00[ASW][hapmap] |
| rs9368251 | 1.00[ASW][hapmap] |
| rs9460561 | 1.00[ASN][1000 genomes] |
| rs9460569 | 1.00[ASN][1000 genomes] |
| rs9460571 | 1.00[ASN][1000 genomes] |
| rs9465885 | 0.80[CEU][hapmap] |
| rs9465892 | 0.80[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs9465894 | 0.80[CEU][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[ASN][1000 genomes] |
| rs9465901 | 1.00[YRI][hapmap] |
| rs9465903 | 1.00[ASN][1000 genomes] |
| rs9465908 | 1.00[ASN][1000 genomes] |
| rs9465917 | 0.80[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465921 | 0.80[CEU][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014