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rVarBase
SNP Report
Basic Infomation
Name
rs4712542  
dbSNP
Location
chr:6,20772818
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1012625
1.00[ASW][hapmap]
rs13210599
1.00[CHB][hapmap]
rs17234378
1.00[ASW][hapmap]
rs4370355
1.00[ASW][hapmap]
rs4710942
1.00[ASW][hapmap]
rs9350298
1.00[ASW][hapmap]
rs9368243
1.00[ASW][hapmap]
rs9368248
1.00[ASW][hapmap]
rs9368251
1.00[ASW][hapmap]
rSNP related genes
Symbol
Regulation type
ENSG00000233848
RNA binding protein mediated regulation
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
FAM55B
SCAN
COL25A1
SCAN
DERL3
SCAN
EVI1
SCAN