SNP Report
Basic Infomation
| Name | rs9465892 dbSNP |
|---|---|
| Location | chr:6,20797722 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10080699 | 0.81[AMR][1000 genomes] |
| rs17234378 | 0.80[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs17826361 | 1.00[CEU][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9295482 | 0.82[YRI][hapmap] |
| rs9460561 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460569 | 0.89[CEU][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs9460571 | 0.92[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465885 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs9465894 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465903 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465908 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465917 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465921 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233848 | Distal transcriptional regulation |
| ENSG00000233848 | RNA binding protein mediated regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FBXL8 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014