SNP Report
Basic Infomation
| Name | rs9460569 dbSNP |
|---|---|
| Location | chr:6,20884219 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10080699 | 0.84[EUR][1000 genomes] |
| rs17234378 | 1.00[ASN][1000 genomes] |
| rs17826361 | 0.89[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60869648 | 0.82[EUR][1000 genomes] |
| rs9460561 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460571 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465885 | 0.89[CEU][hapmap] |
| rs9465892 | 0.89[CEU][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs9465894 | 0.88[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs9465903 | 1.00[ASN][1000 genomes] |
| rs9465908 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465917 | 0.89[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465921 | 0.88[CEU][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465930 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014