SNP Report

Basic Infomation

Name	rs1583333 dbSNP
Location	chr:8,130614899
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10098310	0.81[JPT][hapmap]
rs10103048	0.81[JPT][hapmap]
rs10956483	0.81[CHB][hapmap]
rs10956485	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs11785889	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12542190	0.91[CHB][hapmap]
rs12676406	0.94[ASN][1000 genomes]
rs12676428	0.96[ASN][1000 genomes]
rs12677963	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[GIH][hapmap];0.82[YRI][hapmap]
rs12681229	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1368700	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1433577	0.91[CHB][hapmap]
rs1433580	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs1433585	0.87[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs1579555	0.85[ASN][1000 genomes]
rs16904119	0.91[CHB][hapmap]
rs16904121	0.89[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16904123	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16904126	0.87[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs16904129	0.80[CEU][hapmap]
rs1946627	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2163952	0.81[JPT][hapmap]
rs2395902	0.81[ASN][1000 genomes]
rs2395904	0.91[ASN][1000 genomes]
rs2395905	0.81[ASN][1000 genomes]
rs2395906	0.81[JPT][hapmap]
rs28500514	0.81[ASN][1000 genomes]
rs28854585	0.84[ASN][1000 genomes]
rs4291235	0.83[ASN][1000 genomes]
rs4407843	0.95[JPT][hapmap]
rs4480083	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs4486162	0.84[ASN][1000 genomes]
rs6470742	0.91[CHB][hapmap]
rs6470743	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs67229233	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6982553	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs6989110	0.86[ASN][1000 genomes]
rs7000230	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7000289	0.95[CHB][hapmap];0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs7000320	0.91[CHB][hapmap]
rs7000372	0.86[CHB][hapmap]
rs7005227	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7008811	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[ASN][1000 genomes]
rs7011870	0.91[CHB][hapmap]
rs7840067	0.91[CHB][hapmap]
rs7840913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7846327	0.91[CHB][hapmap]
rs996313	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CCDC26	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
PHF20L1	SCAN
FAM49B	SCAN
GSDMC	SCAN