SNP Report

Basic Infomation

Name	rs1433580 dbSNP
Location	chr:8,130603707
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10094039	0.90[JPT][hapmap]
rs10098310	0.95[JPT][hapmap]
rs10103048	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10107630	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10956483	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10956485	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11785889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12542190	0.96[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12548063	0.88[ASN][1000 genomes]
rs12676406	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12676428	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12677963	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12681229	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs13277237	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1368700	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1433577	1.00[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1583333	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs1594774	0.89[ASN][1000 genomes]
rs16904119	0.87[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs16904121	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs16904123	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs1865223	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1946627	0.91[ASN][1000 genomes]
rs2043404	0.88[ASN][1000 genomes]
rs2163952	0.95[JPT][hapmap]
rs2395904	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2395906	0.95[JPT][hapmap]
rs4319050	0.89[ASN][1000 genomes]
rs4407843	0.82[JPT][hapmap]
rs4480083	0.82[JPT][hapmap]
rs57924547	0.84[ASN][1000 genomes]
rs59292525	0.87[ASN][1000 genomes]
rs61453473	0.89[ASN][1000 genomes]
rs6470742	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs6470743	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67229233	0.82[ASN][1000 genomes]
rs6982371	0.88[ASN][1000 genomes]
rs6982553	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7000230	0.94[ASN][1000 genomes]
rs7000289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000320	0.87[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7000372	0.87[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7005227	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7006214	0.89[ASN][1000 genomes]
rs7008811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7011870	0.87[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs72609887	0.87[ASN][1000 genomes]
rs7831493	0.83[ASN][1000 genomes]
rs7840067	0.87[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7840212	0.80[CEU][hapmap]
rs7840913	0.92[ASN][1000 genomes]
rs7846327	0.87[CEU][hapmap];0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs9642890	0.88[ASN][1000 genomes]
rs996313	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CCDC26	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)