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rVarBase
SNP Report
Basic Infomation
Name
rs7840212  
dbSNP
Location
chr:8,130599247
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10505545
0.87[JPT][hapmap]
rs1368700
0.80[CEU][hapmap];0.83[MEX][hapmap]
rs1433577
0.80[CEU][hapmap]
rs1433580
0.80[CEU][hapmap]
rs7000289
0.80[CEU][hapmap]
rs7005227
0.80[CEU][hapmap]
rs7008811
0.80[CEU][hapmap];0.83[MEX][hapmap]
rs7817503
0.87[JPT][hapmap]
rs996313
0.80[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
CCDC26
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
PRKCH
seeQTL
EFR3A
SCAN
PHF20L1
SCAN
ST3GAL1
SCAN