SNP Report
Basic Infomation
| Name | rs1368700 dbSNP |
|---|---|
| Location | chr:8,130600091 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 53)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10094039 | 0.81[JPT][hapmap] |
| rs10103048 | 0.82[GIH][hapmap];0.86[JPT][hapmap] |
| rs10107630 | 0.81[JPT][hapmap] |
| rs10956483 | 0.81[CHB][hapmap] |
| rs10956485 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11785889 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12542190 | 0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12544501 | 0.81[ASN][1000 genomes] |
| rs12548063 | 0.82[ASN][1000 genomes] |
| rs12676406 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12676428 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12677963 | 0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12681229 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs13277237 | 0.84[GIH][hapmap];0.81[JPT][hapmap] |
| rs1433577 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1433580 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1583333 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1594774 | 0.81[ASN][1000 genomes] |
| rs16904119 | 0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs16904121 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs16904123 | 1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1865223 | 0.82[GIH][hapmap];0.81[JPT][hapmap] |
| rs1946627 | 0.83[ASN][1000 genomes] |
| rs2043404 | 0.82[ASN][1000 genomes] |
| rs2163952 | 0.86[JPT][hapmap] |
| rs2395904 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2395906 | 0.86[JPT][hapmap] |
| rs4319050 | 0.81[ASN][1000 genomes] |
| rs4407843 | 1.00[JPT][hapmap] |
| rs4480083 | 1.00[JPT][hapmap] |
| rs55964818 | 0.81[ASN][1000 genomes] |
| rs59292525 | 0.81[ASN][1000 genomes] |
| rs61453473 | 0.81[ASN][1000 genomes] |
| rs6470742 | 0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6470743 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs67229233 | 0.88[ASN][1000 genomes] |
| rs6982371 | 0.81[ASN][1000 genomes] |
| rs6982553 | 0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7000230 | 0.88[ASN][1000 genomes] |
| rs7000289 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7000320 | 0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7000372 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap] |
| rs7005227 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7006214 | 0.81[ASN][1000 genomes] |
| rs7008811 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7011870 | 0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs72609887 | 0.80[ASN][1000 genomes] |
| rs7840067 | 0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7840212 | 0.80[CEU][hapmap];0.83[MEX][hapmap] |
| rs7840913 | 0.84[ASN][1000 genomes] |
| rs7846327 | 0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.81[ASN][1000 genomes] |
| rs9642890 | 0.82[ASN][1000 genomes] |
| rs996313 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC26 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014