SNP Report
Basic Infomation
| Name | rs16904126 dbSNP |
|---|---|
| Location | chr:8,130627979 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11785889 | 0.80[EUR][1000 genomes] |
| rs12681229 | 0.94[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1433585 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1583333 | 0.87[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs16904121 | 0.80[CEU][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs16904123 | 0.87[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs16904129 | 0.84[ASW][hapmap];0.93[CEU][hapmap];0.86[GIH][hapmap];0.82[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1946627 | 0.82[EUR][1000 genomes] |
| rs4487716 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs58811566 | 0.90[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs67229233 | 0.82[EUR][1000 genomes] |
| rs7840913 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC26 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014